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Trmt61b tRNA methyltransferase 61B [ Mus musculus (house mouse) ]

Gene ID: 68789, updated on 22-Oct-2024

Summary

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Official Symbol
Trmt61bprovided by MGI
Official Full Name
tRNA methyltransferase 61Bprovided by MGI
Primary source
MGI:MGI:1916039
See related
Ensembl:ENSMUSG00000085492 AllianceGenome:MGI:1916039
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
623451; Gm6431; 1110039F03Rik
Expression
Ubiquitous expression in CNS E18 (RPKM 2.0), CNS E14 (RPKM 1.9) and 28 other tissues See more
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Genomic context

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See Trmt61b in Genome Data Viewer
Location:
17 E1.3; 17 41.87 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (71864022..71905756, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (71557027..71598761, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene NDC80 kinetochore complex component Neighboring gene STARR-positive B cell enhancer ABC_E1200 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:71876428-71876537 Neighboring gene methyltransferase 4, pseudogene 1 Neighboring gene speedy/RINGO cell cycle regulator family, member A Neighboring gene ribosomal protein L17 pseudogene Neighboring gene nuclear encoded tRNA cysteine 52 (anticodon GCA) Neighboring gene STARR-positive B cell enhancer ABC_E10968 Neighboring gene predicted gene, 30091

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Other Names

  • tRNA methyltransferase 61 homolog B

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015549.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the longest transcript.
    Source sequence(s)
    AK032413, AK036113, BY267261
    Related
    ENSMUST00000137830.9

  2. NR_027952.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon in the 3' region, as compared to variant 1.
    Source sequence(s)
    AK032413, AK036113, BY267261
    Related
    ENSMUST00000130952.9

  3. NR_027953.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks several 3' exons and an internal segment in the 5' region, and has an alternate 3' sequence, as compared to variant 1.
    Source sequence(s)
    AA268702, AI265689, AV281826, CJ209011

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    71864022..71905756 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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