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Lppos LIM domain containing preferred translocation partner in lipoma, opposite strand [ Mus musculus (house mouse) ]

Gene ID: 68841, updated on 22-Oct-2024

Summary

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Official Symbol
Lpposprovided by MGI
Official Full Name
LIM domain containing preferred translocation partner in lipoma, opposite strandprovided by MGI
Primary source
MGI:MGI:1916091
See related
Ensembl:ENSMUSG00000119959 AllianceGenome:MGI:1916091
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1110054M08Rik
Expression
Ubiquitous expression in adrenal adult (RPKM 16.8), liver adult (RPKM 16.3) and 26 other tissues See more
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Genomic context

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See Lppos in Genome Data Viewer
Location:
16 B1; 16 16.17 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (24211306..24212405, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (24392556..24393655, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_40457 Neighboring gene predicted gene, 41434 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:24428914-24429115 Neighboring gene BMP2 inducible kinase pseudogene Neighboring gene predicted gene, 24440 Neighboring gene STARR-positive B cell enhancer ABC_E7434 Neighboring gene LIM domain containing preferred translocation partner in lipoma Neighboring gene STARR-seq mESC enhancer starr_40461 Neighboring gene STARR-seq mESC enhancer starr_40463 Neighboring gene mortality factor 4 like 1, pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037954.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC116484, AI481106, AK004252
    Related
    ENSMUST00000275110.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    24211306..24212405 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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