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LOC688649 similar to spermatogenesis associated glutamate (E)-rich protein 4d [ Rattus norvegicus (Norway rat) ]

Gene ID: 688649, discontinued on 26-Mar-2024
  • This record was withdrawn by the Rat Genome Database (RGD).

Summary

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Symbol
LOC688649provided by RGD
Full Name
similar to spermatogenesis associated glutamate (E)-rich protein 4dprovided by RGD
Primary source
RGD:1586451
Gene type
protein coding
RefSeq status
WITHDRAWN
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
DISCONTINUED: This record was withdrawn by the Rat Genome Database (RGD).
Expression
Biased expression in Testes (RPKM 97.1), Brain (RPKM 47.4) and 6 other tissues See more
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Genomic context

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See LOC688649 in Genome Data Viewer
Location:
19q11
Exon count:
8
Annotation release Status Assembly Chr Location
106 latest, but not current Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (27832329..27843588)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_005118.4 Chromosome 19 Reference Rnor_6.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General protein information

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Names
similar to spermatogenesis associated glutamate (E)-rich protein 4d
disks large homolog 5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 (NOTE: not current)

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005118.4 Reference Rnor_6.0 Primary Assembly

    Range
    27832329..27843588
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017601507.1 → XP_017456996.1  

  2. XM_017601508.1 → XP_017456997.1  

  3. XM_008772435.2 → XP_008770657.1  

  4. XM_006255371.3 → XP_006255433.1  

  5. XM_017601509.1 → XP_017456998.1  

  6. XM_006255367.3 → XP_006255429.1  

Gene LinkOut

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