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Cmya5 cardiomyopathy associated 5 [ Rattus norvegicus (Norway rat) ]

Gene ID: 688915, updated on 3-Dec-2024

Summary

Gene symbol
Cmya5
Gene description
cardiomyopathy associated 5
See related
EnsemblRapid:ENSRNOG00000023803
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Muscle (RPKM 4623.1) and Heart (RPKM 1291.0) See more
Orthologs
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Genomic context

See Cmya5 in Genome Data Viewer
Location:
2q12
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (26014545..26113273, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (24279520..24378253, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (22646694..22744536, complement)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134485815 Neighboring gene uncharacterized LOC108349921 Neighboring gene uncharacterized LOC134485816 Neighboring gene terminal nucleotidyltransferase 2 Neighboring gene uncharacterized LOC134485575

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
cardiomyopathy-associated protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001433255.1NP_001420184.1  cardiomyopathy-associated protein 5

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000002
    UniProtKB/TrEMBL
    A0A8I6ACF9, M0R557

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    26014545..26113273 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006231789.5XP_006231851.1  cardiomyopathy-associated protein 5

    Related
    ENSRNOP00000064514.2, ENSRNOT00000073710.5
    Conserved Domains (3) summary
    cd00063
    Location:35933676
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl02614
    Location:37713933
    SPRY; SPRY domain
    cl23765
    Location:34203544
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits