Pdf peptide deformylase (mitochondrial) [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Pdfprovided by RGD
Official Full Name: peptide deformylase (mitochondrial)provided by RGD
Primary source: RGD:1582894
See related: EnsemblRapid:ENSRNOG00000022303 AllianceGenome:RGD:1582894
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to enable peptide deformylase activity. Predicted to be involved in several processes, including N-terminal protein amino acid modification; co-translational protein modification; and peptidyl-methionine modification. Predicted to be active in mitochondrion. Orthologous to human PDF (peptide deformylase, mitochondrial). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Heart (RPKM 123.4), Kidney (RPKM 108.1) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 19q12

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	19	NC_086037.1 (51859159..51861281, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	19	NC_051354.1 (34949408..34951621, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	19	NC_005118.4 (39244242..39246636, complement)

Chromosome 19 - NC_086037.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables peptide deformylase activity	IBA Inferred from Biological aspect of Ancestor more info
enables peptide deformylase activity	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
involved_in N-terminal protein amino acid modification	ISO Inferred from Sequence Orthology more info
involved_in co-translational protein modification	IBA Inferred from Biological aspect of Ancestor more info
involved_in peptidyl-methionine modification	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of cell population proliferation	ISO Inferred from Sequence Orthology more info
involved_in translation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in mitochondrion	IBA Inferred from Biological aspect of Ancestor more info
located_in mitochondrion	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: peptide deformylase, mitochondrial

Names: peptide deformylase-like protein-like

NP_001388000.1

EC 3.5.1.88

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.