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Dmbt1l1 deleted in malignant brain tumors 1 like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 691970, updated on 2-Nov-2024

Summary

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Official Symbol
Dmbt1l1provided by RGD
Official Full Name
deleted in malignant brain tumors 1 like 1provided by RGD
Primary source
RGD:1593322
See related
EnsemblRapid:ENSRNOG00000022737 AllianceGenome:RGD:1593322
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Cdcp3; RGD1560452
Summary
Predicted to be involved in cell differentiation and protein transport. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward (RPKM 120.4) See more
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Genomic context

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See Dmbt1l1 in Genome Data Viewer
Location:
1q41
Exon count:
68
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (195380082..195514521)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (185949897..186084340)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (201741011..201816021)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene deleted in malignant brain tumors 1 Neighboring gene similar to human chromosome 10 open reading frame 120 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene CUB and zona pellucida-like domains 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
  
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
deleted in malignant brain tumors 1 protein; putative DMBT1-like protein
Names
CUB domain containing protein 3
deleted in malignant brain tumors 1 protein-like
putative ZP domain-containing protein LOC729800-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    195380082..195514521
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063279682.1 → XP_063135752.1  deleted in malignant brain tumors 1 protein isoform X1

    UniProtKB/TrEMBL
    A0A8I6A528
    Related
    ENSRNOP00000086319.1, ENSRNOT00000109559.2

  2. XM_063279683.1 → XP_063135753.1  putative DMBT1-like protein isoform X2

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials