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1700012B07Rik RIKEN cDNA 1700012B07 gene [ Mus musculus (house mouse) ]

Gene ID: 69324, updated on 27-Nov-2024

Summary

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Official Symbol
1700012B07Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700012B07 geneprovided by MGI
Primary source
MGI:MGI:1916574
See related
Ensembl:ENSMUSG00000020617 AllianceGenome:MGI:1916574
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700069D21Rik
Expression
Restricted expression toward testis adult (RPKM 57.0) See more
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Genomic context

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See 1700012B07Rik in Genome Data Viewer
Location:
11 E1; 11 72.61 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (109679093..109718905, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (109788266..109828079, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105243553 Neighboring gene FAM20A, golgi associated secretory pathway pseudokinase Neighboring gene STARR-seq mESC enhancer starr_31027 Neighboring gene STARR-seq mESC enhancer starr_31028 Neighboring gene STARR-seq mESC enhancer starr_31029 Neighboring gene predicted gene, 42093 Neighboring gene predicted gene 11683 Neighboring gene RIKEN cDNA 1700023C21 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:109721516-109721718 Neighboring gene STARR-positive B cell enhancer ABC_E3034 Neighboring gene STARR-seq mESC enhancer starr_31030 Neighboring gene STARR-seq mESC enhancer starr_31031 Neighboring gene STARR-seq mESC enhancer starr_31032 Neighboring gene predicted gene, 39444

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Coiled-coil domain containing 159 is required for spermatid head and tail assembly in mice†. Ge T, et al. Biol Reprod, 2024 May 9. PMID 38236177
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC69324

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001162428.1 → NP_001155900.1  uncharacterized protein LOC69324 isoform 1

    See identical proteins and their annotated locations for NP_001155900.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK132924
    Consensus CDS
    CCDS48973.1
    UniProtKB/TrEMBL
    Q2TBY1, Q3V0S8
    Related
    ENSMUSP00000102285.2, ENSMUST00000106674.8

  2. NM_027038.1 → NP_081314.1  uncharacterized protein LOC69324 isoform 2

    See identical proteins and their annotated locations for NP_081314.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice junction for its 3' terminus, compared to variant 1, that results in a shorter protein (isoform 2) with a distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AK005888, AK132924
    Consensus CDS
    CCDS48972.1
    UniProtKB/TrEMBL
    Q4KKZ5, Q9DAE9
    Related
    ENSMUSP00000020941.5, ENSMUST00000020941.11

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    109679093..109718905 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006534114.4 → XP_006534177.1  uncharacterized protein LOC69324 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

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