U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Ccdc54 coiled-coil domain containing 54 [ Mus musculus (house mouse) ]

Gene ID: 69339, updated on 4-Jan-2025

Summary

Go to the top of the page Help
Official Symbol
Ccdc54provided by MGI
Official Full Name
coiled-coil domain containing 54provided by MGI
Primary source
MGI:MGI:1916589
See related
Ensembl:ENSMUSG00000050685 AllianceGenome:MGI:1916589
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
NYD-SP17; 1700007N18Rik
Summary
Orthologous to human CCDC54 (coiled-coil domain containing 54). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Ccdc54 in Genome Data Viewer
Location:
16 B5; 16 31.5 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (50410222..50411517, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (50589859..50591154, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA G730013B05 gene Neighboring gene predicted gene, 41459 Neighboring gene STARR-seq mESC enhancer starr_40993 Neighboring gene RIKEN cDNA 4930542D17 gene Neighboring gene protease (prosome, macropain) 26S subunit, ATPase 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_40994 Neighboring gene microRNA 6363 Neighboring gene Dppa2 upstream binding RNA

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
coiled-coil domain-containing protein 54
Names
testes development-related NYD-SP17

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027046.4 → NP_081322.1  coiled-coil domain-containing protein 54

    See identical proteins and their annotated locations for NP_081322.1

    Status: VALIDATED

    Source sequence(s)
    AC138306
    Consensus CDS
    CCDS28214.1
    UniProtKB/Swiss-Prot
    Q9DAL3
    Related
    ENSMUSP00000049864.5, ENSMUST00000062439.6
    Conserved Domains (1) summary
    COG3883
    Location:89 → 146
    CwlO1; Uncharacterized N-terminal domain of peptidoglycan hydrolase CwlO [Function unknown]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    50410222..50411517 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9DAL3.1 GenPept UniProtKB/Swiss-Prot:Q9DAL3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools