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Tmem45a2 transmembrane protein 45A2 [ Mus musculus (house mouse) ]

Gene ID: 69457, updated on 27-Nov-2024

Summary

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Official Symbol
Tmem45a2provided by MGI
Official Full Name
transmembrane protein 45A2provided by MGI
Primary source
MGI:MGI:1916707
See related
Ensembl:ENSMUSG00000046748 AllianceGenome:MGI:1916707
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2310005G13Rik
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Tmem45a2 in Genome Data Viewer
Location:
16 C1.1; 16 34.22 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (56857330..56892486, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (57036967..57071346, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene leukemia NUP98 fusion partner 1 Neighboring gene STARR-seq mESC enhancer starr_41072 Neighboring gene STARR-seq mESC enhancer starr_41073 Neighboring gene STARR-seq mESC enhancer starr_41074 Neighboring gene heterogeneous nuclear ribonucleoprotein M pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E1927 Neighboring gene translocase of outer mitochondrial membrane 70A Neighboring gene nitrilase family, member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC69457

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001358101.1 → NP_001345030.1  uncharacterized protein LOC69457

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    CT009577
    Consensus CDS
    CCDS49875.1
    UniProtKB/TrEMBL
    B7ZWJ5
    Related
    ENSMUSP00000154589.2, ENSMUST00000227043.2
    Conserved Domains (1) summary
    pfam04819
    Location:136 → 254
    DUF716; Family of unknown function (DUF716)

  2. NM_183281.2 → NP_899104.2  uncharacterized protein LOC69457

    See identical proteins and their annotated locations for NP_899104.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK009173, AK036849, CN831346, CT009577
    Consensus CDS
    CCDS49875.1
    UniProtKB/TrEMBL
    B7ZWJ5
    Related
    ENSMUSP00000070137.7, ENSMUST00000067173.8
    Conserved Domains (1) summary
    pfam04819
    Location:136 → 254
    DUF716; Family of unknown function (DUF716)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    56857330..56892486 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036160108.1 → XP_036016001.1  uncharacterized protein LOC69457 isoform X1

    UniProtKB/TrEMBL
    B7ZWJ5
    Conserved Domains (1) summary
    pfam04819
    Location:136 → 254
    DUF716; Family of unknown function (DUF716)
Nucleotide Protein Strain
Heading Accession and Version

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