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1700028I16Rik RIKEN cDNA 1700028I16 gene [ Mus musculus (house mouse) ]

Gene ID: 70003, updated on 22-Oct-2024

Summary

Official Symbol
1700028I16Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700028I16 geneprovided by MGI
Primary source
MGI:MGI:1917253
See related
Ensembl:ENSMUSG00000056821 AllianceGenome:MGI:1917253
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 32.5) See more
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Genomic context

See 1700028I16Rik in Genome Data Viewer
Location:
10 C1; 10 40.64 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (82647957..82660076)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (82812123..82824242)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_27366 Neighboring gene thymine DNA glycosylase Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:82129373-82129482 Neighboring gene glycosyltransferase 8 domain containing 2 Neighboring gene STARR-positive B cell enhancer ABC_E8353 Neighboring gene STARR-seq mESC enhancer starr_27367 Neighboring gene STARR-seq mESC enhancer starr_27368 Neighboring gene host cell factor C2 Neighboring gene STARR-positive B cell enhancer ABC_E6891 Neighboring gene nuclear transcription factor-Y beta Neighboring gene STARR-seq mESC enhancer starr_27374 Neighboring gene STARR-seq mESC enhancer starr_27375 Neighboring gene STARR-seq mESC enhancer starr_27376 Neighboring gene STARR-positive B cell enhancer ABC_E9798 Neighboring gene STARR-seq mESC enhancer starr_27377 Neighboring gene thioredoxin reductase 1 Neighboring gene STARR-seq mESC enhancer starr_27378 Neighboring gene predicted gene, 38560 Neighboring gene EP300 interacting inhibitor of differentiation 3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038042.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC155709
    Related
    ENSMUST00000178540.9

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    82647957..82660076
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)