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Cd248 CD248 antigen, endosialin [ Mus musculus (house mouse) ]

Gene ID: 70445, updated on 27-Nov-2024

Summary

Official Symbol
Cd248provided by MGI
Official Full Name
CD248 antigen, endosialinprovided by MGI
Primary source
MGI:MGI:1917695
See related
Ensembl:ENSMUSG00000056481 AllianceGenome:MGI:1917695
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Tem1; Cd164l1; 2610111G01Rik
Summary
Enables extracellular matrix binding activity. Acts upstream of or within several processes, including fibroblast migration; lymph node development; and positive regulation of endothelial cell apoptotic process. Located in cytoplasm. Is expressed in several structures, including alimentary system; genitourinary system; hemolymphoid system; integumental system; and skeleton. Orthologous to human CD248 (CD248 molecule). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See Cd248 in Genome Data Viewer
Location:
19 A; 19 4.24 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (5118106..5120668)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (5068078..5070640)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:5041192-5041379 Neighboring gene breast cancer metastasis-suppressor 1 Neighboring gene Ras and Rab interactor 1 Neighboring gene STARR-positive B cell enhancer ABC_E1968 Neighboring gene uncharacterized LOC132660285 Neighboring gene STARR-positive B cell enhancer ABC_E7627 Neighboring gene transmembrane protein 151A Neighboring gene Yip1 interacting factor homolog A (S. cerevisiae) Neighboring gene cornichon family AMPA receptor auxiliary protein 2

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 
  • Targeted (4)  1 citation

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 
enables extracellular matrix binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables extracellular matrix binding IDA
Inferred from Direct Assay
more info
PubMed 
enables extracellular matrix protein binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in external side of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
PubMed 

General protein information

Preferred Names
endosialin
Names
CD164 sialomucin-like 1
tumor endothelial marker 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_054042.2NP_473383.1  endosialin precursor

    See identical proteins and their annotated locations for NP_473383.1

    Status: VALIDATED

    Source sequence(s)
    BC046318
    Consensus CDS
    CCDS29448.1
    UniProtKB/Swiss-Prot
    Q3UMV6, Q91V98, Q91ZV1
    UniProtKB/TrEMBL
    A0A172Q386
    Related
    ENSMUSP00000070847.7, ENSMUST00000070630.8
    Conserved Domains (4) summary
    cd03600
    Location:29160
    CLECT_thrombomodulin_like; C-type lectin-like domain (CTLD) of the type found in human thrombomodulin(TM), Endosialin, C14orf27, and C1qR
    smart00179
    Location:312350
    EGF_CA; Calcium-binding EGF-like domain
    pfam01826
    Location:269316
    TIL; Trypsin Inhibitor like cysteine rich domain
    pfam14670
    Location:235271
    FXa_inhibition; Coagulation Factor Xa inhibitory site

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    5118106..5120668
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)