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Mir205hg Mir205 host gene [ Mus musculus (house mouse) ]

Gene ID: 70800, updated on 2-Nov-2024

Summary

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Official Symbol
Mir205hgprovided by MGI
Official Full Name
Mir205 host geneprovided by MGI
Primary source
MGI:MGI:1918050
See related
Ensembl:ENSMUSG00000097850 AllianceGenome:MGI:1918050
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4631405K08Rik
Summary
Involved in several processes, including hormone biosynthetic process; prolactin metabolic process; and regulation of DNA-binding transcription factor activity. Is expressed in several structures, including alimentary system; branchial arch; future brain; nose; and respiratory system. Orthologous to human MIR205HG (MIR205 host gene). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in bladder adult (RPKM 4.3), limb E14.5 (RPKM 1.5) and 4 other tissues See more
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Genomic context

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See Mir205hg in Genome Data Viewer
Location:
1 H6; 1 97.82 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (193188768..193192518, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (193506460..193510210, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_03475 Neighboring gene STARR-seq mESC enhancer starr_03476 Neighboring gene predicted gene, 38022 Neighboring gene predicted gene, 31753 Neighboring gene STARR-seq mESC enhancer starr_03477 Neighboring gene STARR-seq mESC enhancer starr_03480 Neighboring gene microRNA 205 Neighboring gene STARR-seq mESC enhancer starr_03484 Neighboring gene STARR-seq mESC enhancer starr_03485 Neighboring gene STARR-seq mESC enhancer starr_03487 Neighboring gene predicted gene, 31870 Neighboring gene predicted gene, 21362

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Human apoE isoforms differentially regulate brain amyloid-β peptide clearance. Castellano JM, et al. Sci Transl Med, 2011 Jun 29. PMID 21715678, Free PMC Article
  2. MIR205HG Is a Long Noncoding RNA that Regulates Growth Hormone and Prolactin Production in the Anterior Pituitary. Du Q, et al. Dev Cell, 2019 May 20. PMID 30982661, Free PMC Article
  3. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in gene expression IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in gene expression IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in hormone biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in multicellular organism growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in prolactin metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of DNA-binding transcription factor activity IDA
Inferred from Direct Assay
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_166150.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL365334
    Related
    ENSMUST00000252669.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    193188768..193192518 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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