U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Dmrtc1c1 DMRT-like family C1c1 [ Mus musculus (house mouse) ]

Gene ID: 71083, updated on 27-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
Dmrtc1c1provided by MGI
Official Full Name
DMRT-like family C1c1provided by MGI
Primary source
MGI:MGI:1918333
See related
Ensembl:ENSMUSG00000067562 AllianceGenome:MGI:1918333
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Dmrt8.3; Dmrtc1c; 4933424F23Rik
Summary
Predicted to be active in nucleus. Is expressed in reproductive system. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in testis adult (RPKM 1.7) and placenta adult (RPKM 1.4) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Dmrtc1c1 in Genome Data Viewer
Location:
X D; X 45.73 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (101841486..101853556)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (102797880..102809950)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene ornithine decarboxylase, structural 1 pseudogene Neighboring gene predicted pseudogene 9119 Neighboring gene STARR-seq mESC enhancer starr_47678 Neighboring gene DMRT-like family pseudogene Neighboring gene DMRT-like family C1b pseudogene Neighboring gene DMRT-like family pseudogene

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Male-biased expression of X-chromosomal DM domain-less Dmrt8 genes in the mouse. Veith AM, et al. Genomics, 2006 Aug. PMID 16488114
  2. Genomewide discovery and classification of candidate ovarian fertility genes in the mouse. Gallardo TD, et al. Genetics, 2007 Sep. PMID 17660561, Free PMC Article
  3. Identification of novel markers of mouse fetal ovary development. Chen H, et al. PLoS One, 2012. PMID 22844512, Free PMC Article
  4. Placental PPARγ regulates spatiotemporally diverse genes and a unique metabolic network. Shalom-Barak T, et al. Dev Biol, 2012 Dec 1. PMID 22967998, Free PMC Article
  5. GUDMAP: the genitourinary developmental molecular anatomy project. McMahon AP, et al. J Am Soc Nephrol, 2008 Apr. PMID 18287559

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Transcripts highly enriched in ovary; gene identified as candidate female fertility factor.
    Title: Genomewide discovery and classification of candidate ovarian fertility genes in the mouse.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC151188, MGC151190

Gene Ontology Provided by MGI

Function Evidence Code Pubs
NOT enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
NOT enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
DMRT-like family C1c

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142691.2 → NP_001136163.1  DMRT-like family C1c isoform 1

    See identical proteins and their annotated locations for NP_001136163.1

    Status: VALIDATED

    Source sequence(s)
    AK016891, AL773565
    Consensus CDS
    CCDS53158.1
    UniProtKB/TrEMBL
    Q9D410
    Related
    ENSMUSP00000113737.2, ENSMUST00000118218.8
    Conserved Domains (1) summary
    pfam15791
    Location:164 → 231
    DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

  2. NM_001359628.1 → NP_001346557.1  DMRT-like family C1c isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL773565
    UniProtKB/TrEMBL
    Q14AJ8
    Conserved Domains (1) summary
    pfam15791
    Location:158 → 226
    DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    101841486..101853556
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006528292.3 → XP_006528355.1  DMRT-like family C1c isoform X3

    See identical proteins and their annotated locations for XP_006528355.1

    UniProtKB/TrEMBL
    Q14AJ8
    Conserved Domains (1) summary
    pfam15791
    Location:158 → 226
    DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

  2. XM_006528293.3 → XP_006528356.1  DMRT-like family C1c isoform X3

    See identical proteins and their annotated locations for XP_006528356.1

    UniProtKB/TrEMBL
    Q14AJ8
    Conserved Domains (1) summary
    pfam15791
    Location:158 → 226
    DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

  3. XM_006528290.4 → XP_006528353.1  DMRT-like family C1c isoform X3

    See identical proteins and their annotated locations for XP_006528353.1

    UniProtKB/TrEMBL
    Q14AJ8
    Conserved Domains (1) summary
    pfam15791
    Location:158 → 226
    DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

  4. XM_006528287.4 → XP_006528350.1  DMRT-like family C1c isoform X2

    See identical proteins and their annotated locations for XP_006528350.1

    Conserved Domains (1) summary
    pfam15791
    Location:166 → 234
    DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

  5. XM_006528288.4 → XP_006528351.1  DMRT-like family C1c isoform X3

    See identical proteins and their annotated locations for XP_006528351.1

    UniProtKB/TrEMBL
    Q14AJ8
    Conserved Domains (1) summary
    pfam15791
    Location:158 → 226
    DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

  6. XM_006528291.3 → XP_006528354.1  DMRT-like family C1c isoform X3

    See identical proteins and their annotated locations for XP_006528354.1

    UniProtKB/TrEMBL
    Q14AJ8
    Conserved Domains (1) summary
    pfam15791
    Location:158 → 226
    DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

  7. XM_006528285.3 → XP_006528348.1  DMRT-like family C1c isoform X1

    See identical proteins and their annotated locations for XP_006528348.1

    Conserved Domains (2) summary
    PHA03247
    Location:93 → 227
    PHA03247; large tegument protein UL36; Provisional
    pfam15791
    Location:179 → 247
    DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials