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4933424G06Rik RIKEN cDNA 4933424G06 gene [ Mus musculus (house mouse) ]

Gene ID: 71166, updated on 27-Nov-2024

Summary

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Official Symbol
4933424G06Rikprovided by MGI
Official Full Name
RIKEN cDNA 4933424G06 geneprovided by MGI
Primary source
MGI:MGI:1918416
See related
Ensembl:ENSMUSG00000102416 AllianceGenome:MGI:1918416
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700104I15Rik
Summary
Orthologous to human C2orf92 (chromosome 2 open reading frame 92). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 14.5) See more
Orthologs
human all
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Genomic context

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See 4933424G06Rik in Genome Data Viewer
Location:
1 B; 1 15.4 cM
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (36749136..36797040)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (36714537..36757959)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E1539 Neighboring gene cytochrome c oxidase subunit 5B Neighboring gene ARP1 actin-related protein 1B, centractin beta Neighboring gene predicted gene, 33533 Neighboring gene STARR-seq mESC enhancer starr_00648 Neighboring gene predicted gene, 18828 Neighboring gene STARR-positive B cell enhancer ABC_E4309 Neighboring gene zeta-chain (TCR) associated protein kinase Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:36854450-36854651 Neighboring gene STARR-seq mESC enhancer starr_00650 Neighboring gene transmembrane protein 131 Neighboring gene STARR-seq mESC enhancer starr_00652 Neighboring gene STARR-seq mESC enhancer starr_00656 Neighboring gene STARR-seq mESC enhancer starr_00657 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:36976691-36976844

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Identification and integrative analysis of 28 novel genes specifically expressed and developmentally regulated in murine spermatogenic cells. Hong S, et al. J Biol Chem, 2005 Mar 4. PMID 15613475
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C2orf92 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001374322.1 → NP_001361251.1  uncharacterized protein C2orf92 homolog

    Status: VALIDATED

    Source sequence(s)
    AC084389
    UniProtKB/TrEMBL
    A0A140LIP3
    Related
    ENSMUSP00000146900.2, ENSMUST00000208994.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    36749136..36797040
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036153674.1 → XP_036009567.1  uncharacterized protein C2orf92 homolog isoform X6

  2. XM_036153671.1 → XP_036009564.1  uncharacterized protein C2orf92 homolog isoform X3

  3. XM_036153672.1 → XP_036009565.1  uncharacterized protein C2orf92 homolog isoform X4

  4. XM_036153668.1 → XP_036009561.1  uncharacterized protein C2orf92 homolog isoform X1

  5. XM_036153670.1 → XP_036009563.1  uncharacterized protein C2orf92 homolog isoform X2

  6. XM_036153673.1 → XP_036009566.1  uncharacterized protein C2orf92 homolog isoform X5

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_040290.1: Suppressed sequence

    Description
    NR_040290.1: This RefSeq was removed because it is now thought that this gene does encode a protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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