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5430402E10Rik RIKEN cDNA 5430402E10 gene [ Mus musculus (house mouse) ]

Gene ID: 71351, updated on 27-Nov-2024

Summary

Official Symbol
5430402E10Rikprovided by MGI
Official Full Name
RIKEN cDNA 5430402E10 geneprovided by MGI
Primary source
MGI:MGI:1918601
See related
Ensembl:ENSMUSG00000044121 AllianceGenome:MGI:1918601
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
OBP2
Summary
Predicted to enable odorant binding activity. Predicted to be active in extracellular space. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Low expression observed in reference dataset See more
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Genomic context

See 5430402E10Rik in Genome Data Viewer
Location:
X B; X 38.32 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (76963392..76968668, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (77919786..77925062, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene probasin Neighboring gene predicted gene 14744 Neighboring gene STARR-seq mESC enhancer starr_47418 Neighboring gene odorant binding protein I f-like pseudogene Neighboring gene odorant binding protein Ia pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
enables odorant binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables odorant binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
odorant binding protein I f-like
Names
odorant binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027768.3NP_082044.1  odorant binding protein I f-like precursor

    See identical proteins and their annotated locations for NP_082044.1

    Status: VALIDATED

    Source sequence(s)
    AK017258, AL808013
    Consensus CDS
    CCDS57766.1
    UniProtKB/TrEMBL
    A0A0D3M038, Q9D3N5
    Related
    ENSMUSP00000052804.4, ENSMUST00000063127.4
    Conserved Domains (1) summary
    pfam00061
    Location:29169
    Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    76963392..76968668 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)