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Spmap2l sperm microtubule associated protein 2 like [ Mus musculus (house mouse) ]

Gene ID: 71868, updated on 27-Nov-2024

Summary

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Official Symbol
Spmap2lprovided by MGI
Official Full Name
sperm microtubule associated protein 2 likeprovided by MGI
Primary source
MGI:MGI:1919118
See related
Ensembl:ENSMUSG00000029248 AllianceGenome:MGI:1919118
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Thegl; 1700023E05Rik
Summary
Is expressed in ductus deferens and testis. Orthologous to human SPMAP2L (sperm microtubule associated protein 2 like). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 43.7) See more
Orthologs
human all
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Genomic context

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See Spmap2l in Genome Data Viewer
Location:
5 C3.3; 5 41.45 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (77163879..77209382)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (77016023..77061541)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase Neighboring gene predicted gene, 54291 Neighboring gene signal recognition particle 72 Neighboring gene RIKEN cDNA 1700112J05 gene Neighboring gene ADP-ribosylation factor-like 9 Neighboring gene STARR-seq mESC enhancer starr_13457 Neighboring gene microRNA 12199 Neighboring gene predicted gene, 57746 Neighboring gene HOP homeobox

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Miyata H, et al. Proc Natl Acad Sci U S A, 2016 Jul 12. PMID 27357688, Free PMC Article
  2. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
  3. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
  4. BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain. Pourhaghighi R, et al. Cell Syst, 2020 Apr 22. PMID 32325033, Free PMC Article
  5. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
sperm microtubule associated protein 2-like
Names
theg spermatid protein like
theg spermatid-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001417738.1 → NP_001404667.1  sperm microtubule associated protein 2-like isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC165975

  2. NM_001417739.1 → NP_001404668.1  sperm microtubule associated protein 2-like isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC114666, AC165975

  3. NM_001417740.1 → NP_001404669.1  sperm microtubule associated protein 2-like isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC165975
    UniProtKB/TrEMBL
    D3YU57
    Related
    ENSMUSP00000112660.2, ENSMUST00000118941.2

  4. NM_027970.2 → NP_082246.1  sperm microtubule associated protein 2-like isoform 1

    See identical proteins and their annotated locations for NP_082246.1

    Status: VALIDATED

    Source sequence(s)
    AC114666, AC165975
    Consensus CDS
    CCDS19369.1
    UniProtKB/Swiss-Prot
    Q9DA15
    Related
    ENSMUSP00000031161.5, ENSMUST00000031161.11
    Conserved Domains (1) summary
    pfam14912
    Location:208 → 275
    THEG; Testicular haploid expressed repeat

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    77163879..77209382
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9DA15.1 GenPept UniProtKB/Swiss-Prot:Q9DA15

Gene LinkOut

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