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Mab21l4 mab-21-like 4 [ Mus musculus (house mouse) ]

Gene ID: 71874, updated on 27-Nov-2024

Summary

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Official Symbol
Mab21l4provided by MGI
Official Full Name
mab-21-like 4provided by MGI
Primary source
MGI:MGI:1919124
See related
Ensembl:ENSMUSG00000034159 AllianceGenome:MGI:1919124
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2310007B03Rik
Summary
Orthologous to human MAB21L4 (mab-21 like 4). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in lung adult (RPKM 29.2), colon adult (RPKM 5.8) and 6 other tissues See more
Orthologs
human all
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Genomic context

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See Mab21l4 in Genome Data Viewer
Location:
1 D; 1 47.03 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (93079076..93088679, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (93151354..93160956, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 36472 Neighboring gene alanine-glyoxylate aminotransferase Neighboring gene ciliary rootlet coiled-coil, rootletin family member 2 Neighboring gene STARR-seq mESC enhancer starr_01724 Neighboring gene STARR-seq mESC enhancer starr_01726 Neighboring gene sushi, nidogen and EGF-like domains 1 Neighboring gene microRNA 6901

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Mouse screen reveals multiple new genes underlying mouse and human hearing loss. Ingham NJ, et al. PLoS Biol, 2019 Apr. PMID 30973865, Free PMC Article
  2. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
  3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 
  • Targeted (1) 

General gene information

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Homology

Clone Names

  • MGC107226

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
protein mab-21-like 4
Names
uncharacterized protein C2orf54 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001159940.2 → NP_001153412.1  protein mab-21-like 4

    See identical proteins and their annotated locations for NP_001153412.1

    Status: VALIDATED

    Source sequence(s)
    AC103673, AC110247
    Consensus CDS
    CCDS15185.1
    UniProtKB/Swiss-Prot
    Q5FWA3, Q8C4S6, Q8CEZ4
    Related
    ENSMUSP00000115971.2, ENSMUST00000143419.2
    Conserved Domains (1) summary
    pfam03281
    Location:146 → 369
    Mab-21; Mab-21 protein

  2. NM_172411.5 → NP_765999.3  protein mab-21-like 4

    See identical proteins and their annotated locations for NP_765999.3

    Status: VALIDATED

    Source sequence(s)
    AC103673, AC110247
    Consensus CDS
    CCDS15185.1
    UniProtKB/Swiss-Prot
    Q5FWA3, Q8C4S6, Q8CEZ4
    Related
    ENSMUSP00000035332.6, ENSMUST00000043718.12
    Conserved Domains (1) summary
    pfam03281
    Location:146 → 369
    Mab-21; Mab-21 protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    93079076..93088679 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006529877.3 → XP_006529940.1  protein mab-21-like 4 isoform X1

    Conserved Domains (1) summary
    pfam03281
    Location:104 → 325
    Mab-21; Mab-21 protein

  2. XM_006529878.3 → XP_006529941.1  protein mab-21-like 4 isoform X2

    Conserved Domains (1) summary
    pfam03281
    Location:20 → 241
    Mab-21; Mab-21 protein
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8CEZ4.2 GenPept UniProtKB/Swiss-Prot:Q8CEZ4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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