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ASF1A anti-silencing function 1A histone chaperone [ Gallus gallus (chicken) ]

Gene ID: 723780, updated on 17-Aug-2024

Summary

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Symbol
ASF1Aprovided by CGNC
Full Name
anti-silencing function 1A histone chaperoneprovided by CGNC
Primary source
CGNC:54362
See related
Ensembl:ENSGALG00010015080
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
ASF1
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Genomic context

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See ASF1A in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (62441791..62451969, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (62336720..62346899, complement)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 184 member A Neighboring gene uncharacterized LOC121110284 Neighboring gene histone chaperone ASF1-like Neighboring gene minichromosome maintenance 9 homologous recombination repair factor Neighboring gene centrosomal protein 85 like Neighboring gene phospholamban Neighboring gene microRNA 199b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Asf1 is required for viability and chromatin assembly during DNA replication in vertebrate cells. Sanematsu F, et al. J Biol Chem, 2006 May 12. PMID 16537536
  2. WD dipeptide motifs and LXXLL motif of chicken HIRA are necessary for transcription repression and the latter motif is essential for interaction with histone deacetylase-2 in vivo. Ahmad A, et al. Biochem Biophys Res Commun, 2003 Dec 26. PMID 14652010
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The physiological role of Asf1 in DT40 cells is reported.
    Title: Asf1 is required for viability and chromatin assembly during DNA replication in vertebrate cells.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA replication-dependent chromatin assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone chaperone ASF1
Names
ASF1 anti-silencing function 1 homolog A
anti-silencing function 1
anti-silencing function protein 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044690.2 → NP_001038155.1  histone chaperone ASF1

    See identical proteins and their annotated locations for NP_001038155.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000063
    UniProtKB/Swiss-Prot
    Q3C1E9
    UniProtKB/TrEMBL
    A0A8V0YJJ5
    Related
    ENSGALP00010021102.1, ENSGALT00010036294.1
    Conserved Domains (1) summary
    pfam04729
    Location:1 → 154
    ASF1_hist_chap; ASF1 like histone chaperone

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    62441791..62451969 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046939010.1 → XP_046794966.1  histone chaperone ASF1 isoform X1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    62336720..62346899 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046914376.1 → XP_046770332.1  histone chaperone ASF1 isoform X2

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3C1E9.1 GenPept UniProtKB/Swiss-Prot:Q3C1E9

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.