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LRK52_RS14970 YicC/YloC family endoribonuclease [ Rhodanobacter denitrificans ]

Gene ID: 72427975, updated on 13-May-2024

Summary

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Gene symbol
LRK52_RS14970
Gene description
YicC/YloC family endoribonuclease
Locus tag
LRK52_RS14970
Gene type
protein coding
Organism
Rhodanobacter denitrificans (strain: FW104-R5)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Rhodanobacteraceae; Rhodanobacter
Old locus tag
LRK52_14970
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Genomic context

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NZ_CP088980.1Genomic Context describing neighboring genes Neighboring gene outer membrane lipid asymmetry maintenance protein MlaD Neighboring gene ATP-binding cassette domain-containing protein Neighboring gene lipid asymmetry maintenance ABC transporter permease subunit MlaE Neighboring gene guanylate kinase Neighboring gene ribonuclease PH Neighboring gene RdgB/HAM1 family non-canonical purine NTP pyrophosphatase Neighboring gene radical SAM family heme chaperone HemW

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP088980.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Discovery and initial characterization of YloC, a novel endoribonuclease in Bacillus subtilis. Ingle S, et al. RNA, 2022 Feb. PMID 34815358, Free PMC Article
  2. A fluorescence-based genetic screen reveals diverse mechanisms silencing small RNA signaling in E. coli. Chen J, et al. Proc Natl Acad Sci U S A, 2021 Jul 6. PMID 34210798, Free PMC Article
  3. Genomic Features and Pervasive Negative Selection in Rhodanobacter Strains Isolated from Nitrate and Heavy Metal Contaminated Aquifer. Peng M, et al. Microbiol Spectr, 2022 Feb 23. PMID 35107332, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
YicC/YloC family endoribonuclease
WP_007509547.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP088980.1 Reference assembly

    Range
    3220933..3221796 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_007509547.1 MULTISPECIES: YicC/YloC family endoribonuclease [Rhodanobacter]

    Conserved Domains (3) summary
    PRK11820
    Location:1 → 287
    PRK11820; hypothetical protein; Provisional
    pfam03755
    Location:3 → 152
    YicC_N; YicC-like family, N-terminal region
    pfam08340
    Location:203 → 287
    DUF1732; Domain of unknown function (DUF1732)
Nucleotide Protein
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