U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Defa-ps1 defensin, alpha, pseudogene 1 [ Mus musculus (house mouse) ]

Gene ID: 727720, updated on 17-Aug-2024

Summary

Official Symbol
Defa-ps1provided by MGI
Official Full Name
defensin, alpha, pseudogene 1provided by MGI
Primary source
MGI:MGI:3630392
See related
Ensembl:ENSMUSG00000095813 AllianceGenome:MGI:3630392
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Crypi; Defcr-ps1; Defcr-ps26
Expression
Biased expression in large intestine adult (RPKM 157.5), duodenum adult (RPKM 103.2) and 1 other tissue See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Defa-ps1 in Genome Data Viewer
Location:
8 A2; 8 10.35 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (22185028..22185869)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (21695012..21695853)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene defensin, alpha, 17 Neighboring gene defensin, alpha, 34 Neighboring gene STARR-seq mESC enhancer starr_20890 Neighboring gene STARR-seq mESC enhancer starr_20891 Neighboring gene predicted gene, 22447 Neighboring gene defensin, alpha, 39 Neighboring gene zinc finger, MYM-type 5 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Other Names

  • 129 cryptdin i
  • defensin-related cryptdin pseudogene 1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003146.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AY746431
    Related
    ENSMUST00000119062.5

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    22185028..22185869
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)