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METD_RS26345 valine--tRNA ligase [ Methylorubrum extorquens DM4 ]

Gene ID: 72992427, updated on 27-Nov-2023

Summary

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Gene symbol
METD_RS26345
Gene description
valine--tRNA ligase
Locus tag
METD_RS26345
Gene type
protein coding
Organism
Methylorubrum extorquens DM4 (strain: DM4, type-material: type strain of Methylobacterium dichloromethanicum)
Lineage
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Methylobacteriaceae; Methylorubrum
Old locus tag
METD_I5748; METDI5748
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Genomic context

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Sequence:
NC_012988.1 (5734772..5737621, complement)

NC_012988.1Genomic Context describing neighboring genes Neighboring gene HAMP domain-containing methyl-accepting chemotaxis protein Neighboring gene Do family serine endopeptidase Neighboring gene DUF2459 domain-containing protein Neighboring gene DUF2497 domain-containing protein Neighboring gene TolC family outer membrane protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012988.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structural basis for non-cognate amino acid discrimination by the valyl-tRNA synthetase editing domain. Fukunaga R, et al. J Biol Chem, 2005 Aug 19. PMID 15970591
  2. Mechanism of molecular interactions for tRNA(Val) recognition by valyl-tRNA synthetase. Fukai S, et al. RNA, 2003 Jan. PMID 12554880, Free PMC Article
  3. Functional group recognition at the aminoacylation and editing sites of E. coli valyl-tRNA synthetase. Tardif KD, et al. RNA, 2004 Mar. PMID 14970394, Free PMC Article
  4. Crucial role of conserved lysine 277 in the fidelity of tRNA aminoacylation by Escherichia coli valyl-tRNA synthetase. Hountondji C, et al. Biochemistry, 2002 Dec 17. PMID 12475234
  5. Nucleotide sequence of Escherichia coli valyl-tRNA synthetase gene valS. Härtlein M, et al. Nucleic Acids Res, 1987 Nov 11. PMID 3317277, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
valine--tRNA ligase
WP_015824732.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012988.1 Reference assembly

    Range
    5734772..5737621 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_015824732.1 valine--tRNA ligase [Methylorubrum extorquens]

    See identical proteins and their annotated locations for WP_015824732.1

    UniProtKB/TrEMBL
    A0A2N9AIK1, C7C944
    Conserved Domains (5) summary
    cd07962
    Location:630 → 763
    Anticodon_Ia_Val; Anticodon-binding domain of valyl tRNA synthetases
    cd00817
    Location:36 → 630
    ValRS_core; catalytic core domain of valyl-tRNA synthetases
    PRK05729
    Location:1 → 948
    valS; valyl-tRNA synthetase; Reviewed
    pfam10458
    Location:882 → 946
    Val_tRNA-synt_C; Valyl tRNA synthetase tRNA binding arm
    pfam13603
    Location:203 → 347
    tRNA-synt_1_2; Leucyl-tRNA synthetase, Domain 2
Nucleotide Protein
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