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2900092C05Rik RIKEN cDNA 2900092C05 gene [ Mus musculus (house mouse) ]

Gene ID: 73090, updated on 27-Nov-2024

Summary

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Official Symbol
2900092C05Rikprovided by MGI
Official Full Name
RIKEN cDNA 2900092C05 geneprovided by MGI
Primary source
MGI:MGI:1920340
See related
Ensembl:ENSMUSG00000030385 AllianceGenome:MGI:1920340
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C19orf18 (chromosome 19 open reading frame 18). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 3.5) See more
Orthologs
human all
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Genomic context

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See 2900092C05Rik in Genome Data Viewer
Location:
7 A1; 7 7.53 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (12246391..12290250)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (12512464..12556323)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 2, receptor, pseudogene 53 Neighboring gene STARR-seq mESC enhancer starr_18051 Neighboring gene zinc finger protein 606 Neighboring gene STARR-seq mESC enhancer starr_18052 Neighboring gene ribosomal protein L5 pseudogene Neighboring gene STARR-seq mESC enhancer starr_18053 Neighboring gene vomeronasal 2, receptor 53 Neighboring gene PC4 and SFRS1 interacting protein 1 pseudogene Neighboring gene vomeronasal 2, receptor 54

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Miyata H, et al. Proc Natl Acad Sci U S A, 2016 Jul 12. PMID 27357688, Free PMC Article
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C19orf18 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028434.3 → NP_082710.2  uncharacterized protein C19orf18 homolog precursor

    See identical proteins and their annotated locations for NP_082710.2

    Status: VALIDATED

    Source sequence(s)
    BC087883
    Consensus CDS
    CCDS20811.1
    UniProtKB/TrEMBL
    Q5I0V9, Q9D6D4
    Related
    ENSMUSP00000032541.5, ENSMUST00000032541.5

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    12246391..12290250
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017312332.2 → XP_017167821.1  uncharacterized protein C19orf18 homolog isoform X1

    UniProtKB/TrEMBL
    Q9D6D4
    Conserved Domains (1) summary
    pfam17686
    Location:24 → 171
    DUF5534; Family of unknown function (DUF5534)
Nucleotide Protein Strain
Heading Accession and Version

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