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PKNH_0505500 ubiquitin carboxyl-terminal hydrolase 13, putative [ Plasmodium knowlesi strain H ]

Gene ID: 7319577, updated on 5-Sep-2024

Summary

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Gene symbol
PKNH_0505500
Gene description
ubiquitin carboxyl-terminal hydrolase 13, putative
Locus tag
PKNH_0505500
See related
PlasmoDB:PKNH_0505500; VEuPathDB:PKNH_0505500
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Plasmodium knowlesi strain H (strain: H)
Lineage
Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Plasmodium)
Old locus tag
PKH_051760
Orthologs
Plasmodium falciparum all
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Genomic context

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See PKNH_0505500 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_011906.2 (210074..213232, complement)

Chromosome 5 - NC_011906.2Genomic Context describing neighboring genes Neighboring gene lysine decarboxylase-like protein, putative Neighboring gene 50S ribosomal protein L10, putative Neighboring gene structural maintenance of chromosomes protein 3, putative Neighboring gene conserved Plasmodium protein, unknown function

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011906.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the simian and human malaria parasite Plasmodium knowlesi. Pain A, et al. Nature, 2008 Oct 9. PMID 18843368, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 13, putative
XP_002258189.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011906.2 Reference assembly

    Range
    210074..213232 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002258153.1 → XP_002258189.1  ubiquitin carboxyl-terminal hydrolase 13, putative [Plasmodium knowlesi strain H]

    See identical proteins and their annotated locations for XP_002258189.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1A7VWI2, A0A1Y3DT75, A0A384L5G2, A0A5K1UB28, B3L1F7
    Conserved Domains (1) summary
    COG5207
    Location:116 → 892
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
Nucleotide Protein
Heading Accession and Version

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