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PKNH_1304800 O-phosphoseryl-tRNA(Sec) selenium transferase, putative [ Plasmodium knowlesi strain H ]

Gene ID: 7322795, updated on 5-Sep-2024

Summary

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Gene symbol
PKNH_1304800
Gene description
O-phosphoseryl-tRNA(Sec) selenium transferase, putative
Locus tag
PKNH_1304800
See related
PlasmoDB:PKNH_1304800; VEuPathDB:PKNH_1304800
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Plasmodium knowlesi strain H (strain: H)
Lineage
Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Plasmodium)
Old locus tag
PKH_130360
Orthologs
Plasmodium falciparum all
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Genomic context

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See PKNH_1304800 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
5
Sequence:
Chromosome: 13; NC_011914.2 (202229..204444, complement)

Chromosome 13 - NC_011914.2Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene conserved protein, unknown function Neighboring gene HAD domain ookinete protein, putative Neighboring gene conserved Plasmodium protein, unknown function

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011914.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the simian and human malaria parasite Plasmodium knowlesi. Pain A, et al. Nature, 2008 Oct 9. PMID 18843368, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-phosphoseryl-tRNA(Sec) selenium transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in conversion of seryl-tRNAsec to selenocys-tRNAsec IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in selenocysteine incorporation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
O-phosphoseryl-tRNA(Sec) selenium transferase, putative
XP_002260554.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011914.2 Reference assembly

    Range
    202229..204444 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002260518.1 → XP_002260554.1  O-phosphoseryl-tRNA(Sec) selenium transferase, putative [Plasmodium knowlesi strain H]

    See identical proteins and their annotated locations for XP_002260554.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1A7VUX2, A0A1Y3DU62, A0A384L2R0, A0A5K1UWK4, B3LB36
    Conserved Domains (1) summary
    cl18945
    Location:18 → 563
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
Heading Accession and Version

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