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1700040F15Rik RIKEN cDNA 1700040F15 gene [ Mus musculus (house mouse) ]

Gene ID: 73329, updated on 2-Nov-2024

Summary

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Official Symbol
1700040F15Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700040F15 geneprovided by MGI
Primary source
MGI:MGI:1920579
See related
Ensembl:ENSMUSG00000100535 AllianceGenome:MGI:1920579
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm21563
Summary
Predicted to be involved in meiotic cell cycle and spermatid development. Predicted to be active in synaptonemal complex. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See 1700040F15Rik in Genome Data Viewer
Location:
Y; Y C3
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) Y NC_000087.8 (71704736..71729300)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) Y NC_000087.7 (71693467..71718031)

Chromosome Y - NC_000087.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 20866 Neighboring gene predicted gene, 20868 Neighboring gene multifunctional methyltransferase subunit TRM112-like protein pseudogene Neighboring gene predicted gene, 20842

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Y chromosomal noncoding RNAs regulate autosomal gene expression via piRNAs in mouse testis. Reddy HM, et al. BMC Biol, 2021 Sep 9. PMID 34503492, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in meiotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in spermatid development IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in synaptonemal complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
X-linked lymphocyte-regulated protein PM1; uncharacterized protein LOC73329

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000087.8 Reference GRCm39 C57BL/6J

    Range
    71704736..71729300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017318757.1 → XP_017174246.1  X-linked lymphocyte-regulated protein PM1

    UniProtKB/TrEMBL
    A0A087WRK1, A0A087WS79
    Related
    ENSMUSP00000139722.2, ENSMUST00000189315.2
    Conserved Domains (1) summary
    pfam04803
    Location:112 → 215
    Cor1; Cor1/Xlr/Xmr conserved region
Nucleotide Protein Strain
Heading Accession and Version

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