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Smim33 small integral membrane protein 33 [ Mus musculus (house mouse) ]

Gene ID: 73449, updated on 27-Nov-2024

Summary

Official Symbol
Smim33provided by MGI
Official Full Name
small integral membrane protein 33provided by MGI
Primary source
MGI:MGI:1920699
See related
Ensembl:ENSMUSG00000073598 AllianceGenome:MGI:1920699
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700066B19Rik
Summary
Predicted to be located in membrane. Orthologous to human SMIM33 (small integral membrane protein 33). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in colon adult (RPKM 4.2), large intestine adult (RPKM 3.6) and 6 other tissues See more
Orthologs
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Genomic context

See Smim33 in Genome Data Viewer
Location:
18 B2; 18 19.22 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (35859895..35863922)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (35726842..35730869)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member C18 Neighboring gene STARR-seq mESC enhancer starr_44246 Neighboring gene endothelial cell surface expressed chemotaxis and apoptosis regulator Neighboring gene STARR-positive B cell enhancer mm9_chr18:35889997-35890297 Neighboring gene stimulator of interferon response cGAMP interactor 1 Neighboring gene STARR-positive B cell enhancer ABC_E9974 Neighboring gene STARR-seq mESC enhancer starr_44249 Neighboring gene STARR-seq mESC enhancer starr_44252 Neighboring gene 40S ribosomal protein S25 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
small integral membrane protein 33

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033168.2NP_001028340.1  small integral membrane protein 33

    See identical proteins and their annotated locations for NP_001028340.1

    Status: PROVISIONAL

    Source sequence(s)
    AK162297
    Consensus CDS
    CCDS50252.1
    UniProtKB/Swiss-Prot
    Q3TS39
    Related
    ENSMUSP00000095222.3, ENSMUST00000097617.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    35859895..35863922
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006526290.4XP_006526353.1  small integral membrane protein 33 isoform X1