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1700067K01Rik RIKEN cDNA 1700067K01 gene [ Mus musculus (house mouse) ]

Gene ID: 73453, updated on 27-Nov-2024

Summary

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Official Symbol
1700067K01Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700067K01 geneprovided by MGI
Primary source
MGI:MGI:1920703
See related
Ensembl:ENSMUSG00000046408 AllianceGenome:MGI:1920703
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Acts upstream of or within in utero embryonic development. Orthologous to human C19orf67 (chromosome 19 open reading frame 67). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in testis adult (RPKM 8.8), kidney adult (RPKM 1.5) and 5 other tissues See more
Orthologs
human all
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Genomic context

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See 1700067K01Rik in Genome Data Viewer
Location:
8 C2; 8 40.24 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (84727145..84731399)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (84000516..84004770)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene protein kinase, cAMP dependent, catalytic, alpha Neighboring gene STARR-seq mESC enhancer starr_22104 Neighboring gene sterile alpha motif domain containing 1 Neighboring gene STARR-positive B cell enhancer ABC_E882 Neighboring gene microRNA 8111 Neighboring gene microRNA 1199 Neighboring gene MISP family member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A staging system for correct phenotype interpretation of mouse embryos harvested on embryonic day 14 (E14.5). Geyer SH, et al. J Anat, 2017 May. PMID 28185240, Free PMC Article
  2. Highly variable penetrance of abnormal phenotypes in embryonic lethal knockout mice. Wilson R, et al. Wellcome Open Res, 2016. PMID 27996060, Free PMC Article
  3. Placentation defects are highly prevalent in embryonic lethal mouse mutants. Perez-Garcia V, et al. Nature, 2018 Mar 22. PMID 29539633, Free PMC Article
  4. Mouse screen reveals multiple new genes underlying mouse and human hearing loss. Ingham NJ, et al. PLoS Biol, 2019 Apr. PMID 30973865, Free PMC Article
  5. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within in utero embryonic development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
UPF0575 protein C19orf67 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_183097.3 → NP_898920.3  UPF0575 protein C19orf67 homolog

    Status: VALIDATED

    Source sequence(s)
    AC156028
    Consensus CDS
    CCDS22464.2
    UniProtKB/Swiss-Prot
    F6UZF9, Q8CF25
    UniProtKB/TrEMBL
    A0A668KLB1
    Related
    ENSMUSP00000159263.2, ENSMUST00000239176.2
    Conserved Domains (1) summary
    pfam11771
    Location:176 → 332
    DUF3314; Protein of unknown function (DUF3314)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    84727145..84731399
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006531403.3 → XP_006531466.1  UPF0575 protein C19orf67 homolog isoform X1

    See identical proteins and their annotated locations for XP_006531466.1

    UniProtKB/Swiss-Prot
    F6UZF9, Q8CF25
    UniProtKB/TrEMBL
    A0A6E0D3Q4
    Related
    ENSMUSP00000062468.9, ENSMUST00000060357.15
    Conserved Domains (1) summary
    pfam11771
    Location:177 → 333
    DUF3314; Protein of unknown function (DUF3314)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8CF25.2 GenPept UniProtKB/Swiss-Prot:Q8CF25

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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