copb1.S COPI coat complex subunit beta 1 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: copb1.S
Official Full Name: COPI coat complex subunit beta 1 S homeolog
Primary source: Xenbase:XB-GENE-17330846
Locus tag: XELAEV_18024623mg
See related: EnsemblRapid:ENSXLAG00005006230 AllianceGenome:Xenbase:XB-GENE-17330846
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary: Predicted to enable structural molecule activity. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in COPI-coated vesicle membrane and Golgi membrane. Predicted to be part of COPI vesicle coat. Orthologous to human COPB1 (COPI coat complex subunit beta 1). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

Location:: chromosome: 4S

Exon count:: 22

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	4S	NC_054378.1 (21904957..21919492, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	4S	NC_030731.1 (21351888..21366711, complement)

Chromosome 4S - NC_054378.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables structural molecule activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within intracellular protein transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within protein transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within vesicle-mediated transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of COPI vesicle coat	IEA Inferred from Electronic Annotation more info
located_in COPI-coated vesicle membrane	IEA Inferred from Electronic Annotation more info
located_in Golgi apparatus	IEA Inferred from Electronic Annotation more info
located_in Golgi membrane	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoplasmic vesicle	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Coatomer subunit beta-like

Names: coatomer protein complex subunit beta 1 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001096614.1 → NP_001090083.1 Coatomer subunit beta-like

See identical proteins and their annotated locations for NP_001090083.1

Status: PROVISIONAL

Source sequence(s)

BC100179

UniProtKB/TrEMBL

A0A974HL63, Q498K6

Related

ENSXLAP00005018564.1, ENSXLAT00005018899.1

Conserved Domains (4) summary

pfam01602
Location:26 → 550

Adaptin_N; Adaptin N terminal region

pfam07718
Location:667 → 807

Coatamer_beta_C; Coatomer beta C-terminal region

pfam14806
Location:816 → 944

Coatomer_b_Cpla; Coatomer beta subunit appendage platform

sd00044
Location:137 → 161

HEAT; HEAT repeat [structural motif]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

21904957..21919492 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)