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Speer4b spermatogenesis associated glutamate (E)-rich protein 4B [ Mus musculus (house mouse) ]

Gene ID: 73526, updated on 27-Nov-2024

Summary

Official Symbol
Speer4bprovided by MGI
Official Full Name
spermatogenesis associated glutamate (E)-rich protein 4Bprovided by MGI
Primary source
MGI:MGI:1920776
See related
Ensembl:ENSMUSG00000048703 AllianceGenome:MGI:1920776
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SPEER-4B; 1700081O22Rik
Expression
Biased expression in testis adult (RPKM 3.7), ovary adult (RPKM 0.9) and 2 other tissues See more
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Genomic context

See Speer4b in Genome Data Viewer
Location:
5 B1; 5 13.23 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (27700807..27706390, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (27495809..27501392, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930584F24 gene Neighboring gene STARR-seq mESC enhancer starr_12680 Neighboring gene STARR-seq mESC enhancer starr_12681 Neighboring gene STARR-seq mESC enhancer starr_12682 Neighboring gene STARR-seq mESC enhancer starr_12683 Neighboring gene STARR-seq mESC enhancer starr_12685 Neighboring gene STARR-seq mESC enhancer starr_12686 Neighboring gene STARR-seq mESC enhancer starr_12689 Neighboring gene nucleoside diphosphate kinase B pseudogene Neighboring gene Dpp6 Hedgehog-responsive enhancer Neighboring gene dipeptidylpeptidase 6 Neighboring gene STARR-seq mESC enhancer starr_12691 Neighboring gene STARR-seq mESC enhancer starr_12692 Neighboring gene STARR-seq mESC enhancer starr_12693 Neighboring gene STARR-seq mESC enhancer starr_12699 Neighboring gene STARR-seq mESC enhancer starr_12703 Neighboring gene STARR-seq mESC enhancer starr_12704 Neighboring gene STARR-seq mESC enhancer starr_12705 Neighboring gene STARR-seq mESC enhancer starr_12706 Neighboring gene predicted gene 16058 Neighboring gene STARR-positive B cell enhancer ABC_E3565 Neighboring gene PAX interacting (with transcription-activation domain) protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
spermatogenesis associated glutamate (E)-rich protein 4b
Names
sperm-associated glutamate (E)-rich protein 4b
spermatogenic-associated glutamate (E)-rich protein 4b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028561.2NP_082837.1  spermatogenesis associated glutamate (E)-rich protein 4b

    See identical proteins and their annotated locations for NP_082837.1

    Status: VALIDATED

    Source sequence(s)
    AK006975, BC119075
    Consensus CDS
    CCDS19140.1
    UniProtKB/TrEMBL
    D3YW71, D3Z2I7, D3Z6H2, D3Z7H5, E0CZ92, E9Q274, F6YG40, Q9D9F7
    Related
    ENSMUSP00000062903.4, ENSMUST00000053257.10
    Conserved Domains (2) summary
    pfam04822
    Location:52133
    Takusan; Takusan
    cl14876
    Location:168231
    Zinc_peptidase_like; Zinc peptidases M18, M20, M28, and M42

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    27700807..27706390 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)