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CG42238 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 7354398, updated on 18-Sep-2024

Summary

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Official Symbol
CG42238provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0250867
Locus tag
Dmel_CG42238
See related
AllianceGenome:FB:FBgn0250867
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG9266; Dmel\CG42238
Orthologs
all
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Genomic context

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See CG42238 in Genome Data Viewer
Location:
38F6-39A1; 2-54 cM
Exon count:
8
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (20965520..21052164, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (20965520..21052164, complement)

Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR44606 Neighboring gene ncRNA Neighboring gene Integrin betanu subunit Neighboring gene uncharacterized protein Neighboring gene torn and diminished rhabdomeres

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A mechanism for circadian control of pacemaker neuron excitability. Ruben M, et al. J Biol Rhythms, 2012 Oct. PMID 23010658, Free PMC Article
  2. Integrative genomic analysis reveals novel regulatory mechanisms of eyeless during Drosophila eye development. Yeung K, et al. Nucleic Acids Res, 2018 Dec 14. PMID 30295802, Free PMC Article
  3. A screen identifying genes responsive to Dpp and Wg signaling in the Drosophila developing wing. Hadar N, et al. Gene, 2012 Feb 15. PMID 22192913
  4. Highly constrained intergenic Drosophila ultraconserved elements are candidate ncRNAs. Kern AD, et al. Genome Biol Evol, 2015 Jan 23. PMID 25618141, Free PMC Article
  5. The Landscape of the DNA Transposons in the Genome of the Horezu_LaPeri Strain of Drosophila melanogaster. Bologa AM, et al. Insects, 2023 May 25. PMID 37367310, Free PMC Article

See all (25) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

mobile_element

  • Loc: c20981725-20981688 mobile_element_type = transposon:1731{}5381

General protein information

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Preferred Names
uncharacterized protein
Names
CG42238-PA
CG42238-PB
CG42238-PC
CG42238-PD
CG42238-PE

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033779.5 Reference assembly

    Range
    20965520..21052164 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001273724.1 → NP_001260653.1  uncharacterized protein Dmel_CG42238, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001260653.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B7YZX8

  2. NM_001144373.2 → NP_001137845.1  uncharacterized protein Dmel_CG42238, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001137845.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B7YZX7, Q95S78

  3. NM_001316403.1 → NP_001303332.1  uncharacterized protein Dmel_CG42238, isoform E [Drosophila melanogaster]

    Status: REVIEWED

    UniProtKB/TrEMBL
    B7YZX8

  4. NM_001144374.2 → NP_001137846.1  uncharacterized protein Dmel_CG42238, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001137846.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B7YZX8

  5. NM_001273725.1 → NP_001260654.1  uncharacterized protein Dmel_CG42238, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001260654.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B7YZX8
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B7YZX7 B7YZX7
B7YZX8 B7YZX8

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