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4933407K13Rik RIKEN cDNA 4933407K13 gene [ Mus musculus (house mouse) ]

Gene ID: 74396, updated on 22-Oct-2024

Summary

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Official Symbol
4933407K13Rikprovided by MGI
Official Full Name
RIKEN cDNA 4933407K13 geneprovided by MGI
Primary source
MGI:MGI:1921646
See related
Ensembl:ENSMUSG00000087396 AllianceGenome:MGI:1921646
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Dxz4; A130080L05Rik
Expression
Ubiquitous expression in ovary adult (RPKM 8.2), CNS E11.5 (RPKM 6.1) and 28 other tissues See more
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Genomic context

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See 4933407K13Rik in Genome Data Viewer
Location:
X; X A7.3
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (74769064..74808305, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (75725458..75764699, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene ring finger and WD repeat domain 2 pseudogene Neighboring gene uncharacterized protein C9orf40 homolog pseudogene Neighboring gene plastin 3 (T-isoform) Neighboring gene STARR-seq mESC enhancer starr_47394 Neighboring gene predicted gene, 23320

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The mouse DXZ4 homolog retains Ctcf binding and proximity to Pls3 despite substantial organizational differences compared to the primate macrosatellite. Horakova AH, et al. Genome Biol, 2012 Aug 20. PMID 22906166, Free PMC Article
  2. In vivo Firre and Dxz4 deletion elucidates roles for autosomal gene regulation. Andergassen D, et al. Elife, 2019 Nov 18. PMID 31738164, Free PMC Article
  3. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
  4. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
  5. Characterization of an exchangeable gene trap using pU-17 carrying a stop codon-beta geo cassette. Taniwaki T, et al. Dev Growth Differ, 2005 Apr. PMID 15840001

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Other Names

  • Dxz4 macrosatellite

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_029443.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL670597
    Related
    ENSMUST00000130744.10

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    74769064..74808305 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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