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THAPSDRAFT_661 mg chelatase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7445876, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_661
Gene description
mg chelatase
Locus tag
THAPSDRAFT_661
Gene type
protein coding
RNA name
mg chelatase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_661 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
6
Sequence:
Chromosome: 10; NC_012073.1 (473286..475656, complement)

Chromosome 10 - NC_012073.1Genomic Context describing neighboring genes Neighboring gene 1-acyl-sn-glycerol-3-phosphate ACYLTRANSFERASE, lysophosphatidic acid acyltransferase Neighboring gene mitochondrial carrier protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012073.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium chelatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chlorophyll biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
mg chelatase
XP_002292830.1
  • based on presence of defining chelatase domain, ATPase and vonWillebrand factor domain and sequence similarity and support from Phaeodactylum EST

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012073.1 Reference assembly

    Range
    473286..475656 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002292794.1 → XP_002292830.1  mg chelatase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002292830.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C9C8
    Conserved Domains (3) summary
    cd01451
    Location:481 → 683
    vWA_Magnesium_chelatase; Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is ...
    TIGR02442
    Location:2 → 670
    Cob-chelat-sub; cobaltochelatase subunit
    cl21455
    Location:126 → 185
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
Heading Accession and Version

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