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THAPSDRAFT_268293 hydroxyacylglutathione hydrolase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7446630, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_268293
Gene description
hydroxyacylglutathione hydrolase
Locus tag
THAPSDRAFT_268293
Gene type
protein coding
RNA name
hydroxyacylglutathione hydrolase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_268293 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_012065.1 (1356031..1357122, complement)

Chromosome 2 - NC_012065.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hydroxyacylglutathione hydrolase Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012065.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydroxyacylglutathione hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hydroxyacylglutathione hydrolase
XP_002287895.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012065.1 Reference assembly

    Range
    1356031..1357122 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002287859.1 → XP_002287895.1  hydroxyacylglutathione hydrolase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002287895.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BUS7
    Conserved Domains (3) summary
    PLN02469
    Location:4 → 260
    PLN02469; hydroxyacylglutathione hydrolase
    pfam16123
    Location:173 → 256
    HAGH_C; Hydroxyacylglutathione hydrolase C-terminus
    cd07723
    Location:7 → 172
    hydroxyacylglutathione_hydrolase_MBL-fold; hydroxyacylglutathione hydrolase, MBL-fold metallo-hydrolase domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials