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4930426D05Rik RIKEN cDNA 4930426D05 gene [ Mus musculus (house mouse) ]

Gene ID: 74644, updated on 27-Nov-2024

Summary

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Official Symbol
4930426D05Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930426D05 geneprovided by MGI
Primary source
MGI:MGI:1921894
See related
AllianceGenome:MGI:1921894
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in thyroid primordium. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in adrenal adult (RPKM 88.8), genital fat pad adult (RPKM 8.0) and 3 other tissues See more
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Genomic context

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See 4930426D05Rik in Genome Data Viewer
Location:
18 A2; 18 11.96 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (21784622..21789164)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (21651565..21656107)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_44013 Neighboring gene STARR-seq mESC enhancer starr_44015 Neighboring gene predicted gene, 22886 Neighboring gene STARR-seq mESC enhancer starr_44016 Neighboring gene predicted gene, 31646 Neighboring gene pyruvate kinase, muscle pseudogene Neighboring gene STARR-seq mESC enhancer starr_44017 Neighboring gene STARR-seq mESC enhancer starr_44018 Neighboring gene kelch-like 14 Neighboring gene STARR-seq mESC enhancer starr_44019 Neighboring gene coiled coil domain containing 178 Neighboring gene STARR-seq mESC enhancer starr_44020 Neighboring gene STARR-seq mESC enhancer starr_44021 Neighboring gene STARR-seq mESC enhancer starr_44023 Neighboring gene STARR-seq mESC enhancer starr_44024 Neighboring gene ribosomal protein SA pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Gene expression profiling at early organogenesis reveals both common and diverse mechanisms in foregut patterning. Fagman H, et al. Dev Biol, 2011 Nov 15. PMID 21924257, Free PMC Article
  2. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
  3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC74644

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001271580.1 → NP_001258509.1  uncharacterized protein LOC74644

    See identical proteins and their annotated locations for NP_001258509.1

    Status: VALIDATED

    Source sequence(s)
    AK015205, AW122173
    UniProtKB/TrEMBL
    Q9D5L2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    21784622..21789164
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030250621.2 → XP_030106481.1  uncharacterized protein LOC74644 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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