U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

4930517E11Rik RIKEN cDNA 4930517E11 gene [ Mus musculus (house mouse) ]

Gene ID: 74702, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
4930517E11Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930517E11 geneprovided by MGI
Primary source
MGI:MGI:1921952
See related
Ensembl:ENSMUSG00000085496 AllianceGenome:MGI:1921952
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See 4930517E11Rik in Genome Data Viewer
Location:
2 F1; 2 60.69 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (123965556..123971876, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (124123636..124129956, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_05565 Neighboring gene predicted gene, 54147 Neighboring gene STARR-seq mESC enhancer starr_05566 Neighboring gene STARR-positive B cell enhancer mm9_chr2:123404999-123405300 Neighboring gene STARR-seq mESC enhancer starr_05568 Neighboring gene predicted gene, 39919 Neighboring gene STARR-seq mESC enhancer starr_05570 Neighboring gene STARR-seq mESC enhancer starr_05571 Neighboring gene RIKEN cDNA 4930583P06 gene Neighboring gene sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D Neighboring gene STARR-seq mESC enhancer starr_05573 Neighboring gene STARR-seq mESC enhancer starr_05574 Neighboring gene STARR-seq mESC enhancer starr_05575 Neighboring gene STARR-seq mESC enhancer starr_05576 Neighboring gene predicted gene, 54148 Neighboring gene predicted gene, 34484

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040611.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AK015809
    Related
    ENSMUST00000129584.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    123965556..123971876 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.