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LOC7470738 homeobox-leucine zipper protein ATHB-8 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7470738, updated on 3-Dec-2024

Summary

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Gene symbol
LOC7470738
Gene description
homeobox-leucine zipper protein ATHB-8
Locus tag
POPTR_006G237500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Also known as
HB8
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Genomic context

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See LOC7470738 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
19
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 6 NC_037290.2 (23956927..23964090, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 6 NC_037290.1 (24667609..24674794, complement)

Chromosome 6 - NC_037290.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC7462295 Neighboring gene leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1 Neighboring gene uncharacterized LOC7462296 Neighboring gene GATA transcription factor 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Developmental and seasonal expression of PtaHB1, a Populus gene encoding a class III HD-Zip protein, is closely associated with secondary growth and inversely correlated with the level of microRNA (miR166). Ko JH, et al. New Phytol, 2006. PMID 16411950
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox-leucine zipper protein ATHB-8
Names
HD-ZIP family protein
class III HD-Zip protein 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037290.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    23956927..23964090 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024603966.2 → XP_024459734.2  homeobox-leucine zipper protein ATHB-8

    UniProtKB/TrEMBL
    A0A2I4KKB9

  2. XM_024603968.2 → XP_024459736.2  homeobox-leucine zipper protein ATHB-8

    UniProtKB/TrEMBL
    A0A2I4KKB9
Nucleotide Protein
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