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LOC7470937 protein disulfide-isomerase 5-4 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7470937, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7470937
Gene description
protein disulfide-isomerase 5-4
Locus tag
POPTR_011G135500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7470937 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
15
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 11 NC_037295.2 (16791169..16797599, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 11 NC_037295.1 (15925603..15932156, complement)

Chromosome 11 - NC_037295.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC7470936 Neighboring gene early nodulin-like protein 1 Neighboring gene electron transfer flavoprotein subunit alpha, mitochondrial Neighboring gene transfer RNA glycine (anticodon CCC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein disulfide-isomerase 5-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037295.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    16791169..16797599 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002317544.4 → XP_002317580.1  protein disulfide-isomerase 5-4

    See identical proteins and their annotated locations for XP_002317580.1

    UniProtKB/TrEMBL
    B9I0B4
    Conserved Domains (3) summary
    cd02961
    Location:144 → 258
    PDI_a_family; Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI ...
    pfam07970
    Location:294 → 465
    COPIIcoated_ERV; Endoplasmic reticulum vesicle transporter
    pfam13850
    Location:7 → 94
    ERGIC_N; Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Nucleotide Protein
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