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LOC7474871 uncharacterized LOC7474871 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7474871, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7474871
Gene description
uncharacterized LOC7474871
Locus tag
POPTR_015G070500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7474871 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
16
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 15 NC_037299.2 (9599050..9604707, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 15 NC_037299.1 (9492534..9498192, complement)

Chromosome 15 - NC_037299.2Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g74900, mitochondrial Neighboring gene E2F transcription factor-like E2FE Neighboring gene aminoaldehyde dehydrogenase 2, peroxisomal Neighboring gene uncharacterized LOC18109366

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC7474871
Names
mannose-1-phosphate guanyltransferase alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037299.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    9599050..9604707 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024586979.2 → XP_024442747.1  uncharacterized protein LOC7474871

    UniProtKB/TrEMBL
    B9IEL3
    Conserved Domains (2) summary
    cd06428
    Location:10 → 274
    M1P_guanylylT_A_like_N; N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase
    cl00160
    Location:303 → 383
    LbetaH; Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes ...

  2. XM_002322110.4 → XP_002322146.1  uncharacterized protein LOC7474871

    See identical proteins and their annotated locations for XP_002322146.1

    UniProtKB/TrEMBL
    B9IEL3
    Conserved Domains (2) summary
    cd06428
    Location:10 → 274
    M1P_guanylylT_A_like_N; N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase
    cl00160
    Location:303 → 383
    LbetaH; Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes ...

  3. XM_024586978.2 → XP_024442746.1  uncharacterized protein LOC7474871

    UniProtKB/TrEMBL
    B9IEL3
    Conserved Domains (2) summary
    cd06428
    Location:10 → 274
    M1P_guanylylT_A_like_N; N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase
    cl00160
    Location:303 → 383
    LbetaH; Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes ...

  4. XM_024586976.2 → XP_024442744.1  uncharacterized protein LOC7474871

    UniProtKB/TrEMBL
    B9IEL3
    Conserved Domains (2) summary
    cd06428
    Location:10 → 274
    M1P_guanylylT_A_like_N; N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase
    cl00160
    Location:303 → 383
    LbetaH; Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes ...
Nucleotide Protein
Heading Accession and Version

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