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4930471G03Rik RIKEN cDNA 4930471G03 gene [ Mus musculus (house mouse) ]

Gene ID: 74966, updated on 22-Oct-2024

Summary

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Official Symbol
4930471G03Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930471G03 geneprovided by MGI
Primary source
MGI:MGI:1922216
See related
Ensembl:ENSMUSG00000117852 AllianceGenome:MGI:1922216
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700007N01Rik
Expression
Restricted expression toward testis adult (RPKM 178.3) See more
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Genomic context

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See 4930471G03Rik in Genome Data Viewer
Location:
18 B2; 18 19.45 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (36239256..36243007)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (36106203..36109954)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene pleckstrin and Sec7 domain containing 2 Neighboring gene STARR-seq mESC enhancer starr_44271 Neighboring gene neuregulin 2 Neighboring gene STARR-seq mESC enhancer starr_44272 Neighboring gene predicted gene, 41694 Neighboring gene STARR-seq mESC enhancer starr_44273 Neighboring gene STARR-seq mESC enhancer starr_44274 Neighboring gene STARR-seq mESC enhancer starr_44276 Neighboring gene predicted gene, 41695 Neighboring gene purine rich element binding protein A Neighboring gene IgA inducing protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Clone Names

  • MGC118288

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015571.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI507014, AK015550
    Related
    ENSMUST00000235667.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    36239256..36243007
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_030089.1: Suppressed sequence

    Description
    NM_030089.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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