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Zcchc13 zinc finger, CCHC domain containing 13 [ Mus musculus (house mouse) ]

Gene ID: 75064, updated on 27-Nov-2024

Summary

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Official Symbol
Zcchc13provided by MGI
Official Full Name
zinc finger, CCHC domain containing 13provided by MGI
Primary source
MGI:MGI:1922314
See related
Ensembl:ENSMUSG00000031330 AllianceGenome:MGI:1922314
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cnbp2; 4930513O09Rik
Summary
Predicted to enable mRNA binding activity; single-stranded RNA binding activity; and translation regulator activity. Predicted to be involved in positive regulation of cytoplasmic translation. Predicted to be active in cytoplasm. Is expressed in central nervous system and sensory organ. Orthologous to human ZCCHC13 (zinc finger CCHC-type containing 13). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human all
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Genomic context

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See Zcchc13 in Genome Data Viewer
Location:
X D; X 46.26 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (102674187..102675277)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (103630586..103631664)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_47698 Neighboring gene microRNA 374b Neighboring gene microRNA 374c Neighboring gene Ftx transcript, Xist regulator, non-protein coding Neighboring gene STARR-seq mESC enhancer starr_47699 Neighboring gene predicted gene 9159 Neighboring gene STARR-positive B cell enhancer ABC_E5733 Neighboring gene predicted gene 53059 Neighboring gene solute carrier family 16 (monocarboxylic acid transporters), member 2 Neighboring gene predicted pseudogene 6222

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative sequence analysis of the X-inactivation center region in mouse, human, and bovine. Chureau C, et al. Genome Res, 2002 Jun. PMID 12045143, Free PMC Article
  2. Identification of an imprinted gene cluster in the X-inactivation center. Kobayashi S, et al. PLoS One, 2013. PMID 23940725, Free PMC Article
  3. Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Miyata H, et al. Proc Natl Acad Sci U S A, 2016 Jul 12. PMID 27357688, Free PMC Article
  4. A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain. McKee AE, et al. BMC Dev Biol, 2005 Jul 20. PMID 16033648, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables single-stranded RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables translation regulator activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in positive regulation of cytoplasmic translation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
zinc finger CCHC domain-containing protein 13
Names
cellular nucleic acid binding protein 2
cellular nucleic acid binding-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029158.3 → NP_083434.1  zinc finger CCHC domain-containing protein 13

    See identical proteins and their annotated locations for NP_083434.1

    Status: VALIDATED

    Source sequence(s)
    AL683845
    Consensus CDS
    CCDS30329.1
    UniProtKB/TrEMBL
    Q9D548
    Related
    ENSMUSP00000033692.8, ENSMUST00000033692.9
    Conserved Domains (1) summary
    PTZ00368
    Location:46 → 167
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    102674187..102675277
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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