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infB translation initiation factor IF-2 [ Vibrio alginolyticus ]

Gene ID: 75166758, updated on 3-Dec-2024

Summary

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Gene symbol
infB
Gene description
translation initiation factor IF-2
Locus tag
NAL94_RS11105
Gene type
protein coding
Organism
Vibrio alginolyticus (strain: E110, nat-host: Penaeus vannamei)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
Old locus tag
NAL94_11105
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Genomic context

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Location:
chromosome: 2

2 - NZ_CP098034.1Genomic Context describing neighboring genes Neighboring gene ribosome maturation factor RimP Neighboring gene transcription termination factor NusA Neighboring gene 30S ribosome-binding factor RbfA Neighboring gene tRNA pseudouridine(55) synthase TruB

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP098034.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. IF2 and unique features of initiator tRNA(fMet) help establish the translational reading frame. Roy B, et al. RNA Biol, 2018. PMID 28914580, Free PMC Article
  2. Both forms of translational initiation factor IF2 (alpha and beta) are required for maximal growth of Escherichia coli. Evidence for two translational initiation codons for IF2 beta. Sacerdot C, et al. J Mol Biol, 1992 May 5. PMID 1374802
  3. Temporal Transcriptional Responses of a Vibrio alginolyticus Strain to Podoviridae Phage HH109 Revealed by RNA-Seq. Li X, et al. mSystems, 2022 Apr 26. PMID 35400200, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
translation initiation factor IF-2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP098034.1 Reference assembly

    Range
    670487..673198
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_005380086.1 MULTISPECIES: translation initiation factor IF-2 [Vibrio]

    See identical proteins and their annotated locations for WP_005380086.1

    UniProtKB/TrEMBL
    A0A0H0YHH5, A0AAP5YWW5, A0AAP6CUT2, A0AAW7A1K4, A0AAW9AMZ3, A0AAW9B1D3, A0AAW9BI82
    Conserved Domains (3) summary
    PRK05306
    Location:176 → 901
    infB; translation initiation factor IF-2; Validated
    pfam04760
    Location:1 → 52
    IF2_N; Translation initiation factor IF-2, N-terminal region
    pfam08364
    Location:62 → 100
    IF2_assoc; Bacterial translation initiation factor IF-2 associated region
Nucleotide Protein
Heading Accession and Version

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