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roxA [50S ribosomal protein L16]-arginine 3-hydroxylase [ Shigella boydii ]

Gene ID: 75203714, updated on 3-Dec-2024

Summary

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Gene symbol
roxA
Gene description
[50S ribosomal protein L16]-arginine 3-hydroxylase
Locus tag
CEH00_RS09545
Gene type
protein coding
Organism
Shigella boydii (strain: ESBL-W3-2, nat-host: Homo sapiens)
Lineage
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
Also known as
ycfD
Old locus tag
CEH00_09595
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Genomic context

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NZ_NIYS01000066.1Genomic Context describing neighboring genes Neighboring gene spermidine/putrescine ABC transporter permease PotB Neighboring gene spermidine/putrescine ABC transporter ATP-binding protein PotA Neighboring gene peptidase T Neighboring gene two-component system sensor histidine kinase PhoQ Neighboring gene two-component system response regulator PhoP

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_NIYS01000066.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure and functional analysis of YcfD, a novel 2-oxoglutarate/Fe²⁺-dependent oxygenase involved in translational regulation in Escherichia coli. van Staalduinen LM, et al. J Mol Biol, 2014 May 1. PMID 24530688
  2. Oxygenase-catalyzed ribosome hydroxylation occurs in prokaryotes and humans. Ge W, et al. Nat Chem Biol, 2012 Dec. PMID 23103944, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
[50S ribosomal protein L16]-arginine 3-hydroxylase
WP_000456506.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_NIYS01000066.1 Reference assembly

    Range
    103429..104550 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_000456506.1 MULTISPECIES: [50S ribosomal protein L16]-arginine 3-hydroxylase [Enterobacteriaceae]

    See identical proteins and their annotated locations for WP_000456506.1

    UniProtKB/Swiss-Prot
    P27431, P75963
    UniProtKB/TrEMBL
    A0A024L4R3, A0A0J3W141, A0A236MZN6, A0A7Z8BQX6, A0A836NFW0, A0A979GDY1, A0A9P2MJT0, A0A9Q5XVN5, A0AA35AJY8, A0AAD2UCQ6, A0AAD2VCC6, A0AAD2ZII9, A0AAN1VJW6, A0AAN3V6M2, W1WXV4
    Conserved Domains (1) summary
    COG2850
    Location:1 → 373
    RoxA; Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
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