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1700047A11Rik RIKEN cDNA 1700047A11 gene [ Mus musculus (house mouse) ]

Gene ID: 76604, updated on 17-Aug-2024

Summary

Official Symbol
1700047A11Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700047A11 geneprovided by MGI
Primary source
MGI:MGI:1923854
See related
Ensembl:ENSMUSG00000085437 AllianceGenome:MGI:1923854
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930554C15Rik
Expression
Broad expression in testis adult (RPKM 1.1), CNS E11.5 (RPKM 0.2) and 17 other tissues See more
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Genomic context

See 1700047A11Rik in Genome Data Viewer
Location:
8 A2; 8 14.35 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (26572637..26586548)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (26082609..26096520)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene protein-O-mannose kinase Neighboring gene predicted gene, 31402 Neighboring gene farnesyltransferase, CAAX box, alpha Neighboring gene STARR-seq mESC enhancer starr_20994 Neighboring gene hook microtubule tethering protein 3 Neighboring gene STARR-seq mESC enhancer starr_20995 Neighboring gene STARR-seq mESC enhancer starr_20996 Neighboring gene STARR-seq mESC enhancer starr_20998 Neighboring gene calcium binding protein 39 pseudogene Neighboring gene ring finger protein 170

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Clone Names

  • AC093366.4

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110583.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AK006702
    Related
    ENSMUST00000153552.9

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    26572637..26586548
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)