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cdh18a cadherin 18, type 2a [ Danio rerio (zebrafish) ]

Gene ID: 767768, updated on 4-Jan-2025

Summary

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Official Symbol
cdh18aprovided by ZNC
Official Full Name
cadherin 18, type 2aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060929-316
See related
Ensembl:ENSDARG00000061371 AllianceGenome:ZFIN:ZDB-GENE-060929-316
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
cdh18; zgc:153531
Summary
Orthologous to human CDH18 (cadherin 18). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See cdh18a in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (29249586..29259232)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (29266053..29275699)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137487830 Neighboring gene cadherin 10, type 2a (T2-cadherin) Neighboring gene cadherin 12a Neighboring gene discs, large (Drosophila) homolog-associated protein 1a Neighboring gene carbonic anhydrase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Pharmacological modulation of melanocortin-4 receptor by melanocortin receptor accessory protein 2 in Nile tilapia. Wang M, et al. Gen Comp Endocrinol, 2019 Oct 1. PMID 31299224
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC153531

General protein information

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Preferred Names
cadherin-18a
Names
cadherin 18, type 2
cadherin 18a, type 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001076735.1 → NP_001070203.1  cadherin-18a precursor

    See identical proteins and their annotated locations for NP_001070203.1

    Status: PROVISIONAL

    Source sequence(s)
    BC124376
    UniProtKB/TrEMBL
    B2GQX8, Q08C62
    Related
    ENSDARP00000089931.4, ENSDART00000099157.5

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    29249586..29259232
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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