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lrrc51 leucine rich repeat containing 51 [ Danio rerio (zebrafish) ]

Gene ID: 767801, updated on 4-Jan-2025

Summary

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Official Symbol
lrrc51provided by ZNC
Official Full Name
leucine rich repeat containing 51provided by ZNC
Primary source
ZFIN:ZDB-GENE-060929-962
See related
Ensembl:ENSDARG00000040668 AllianceGenome:ZFIN:ZDB-GENE-060929-962
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
lrrp51; lrtomt; zgc:153736
Summary
Located in nucleus. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See lrrc51 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (44053244..44062826)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (44029801..44049290)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene nuclear mitotic apparatus protein 1-like Neighboring gene small Cajal body-specific RNA 14 Neighboring gene nuclear mitotic apparatus protein 1 Neighboring gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 Neighboring gene paraneoplastic antigen Ma2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Integration of Tmc1/2 into the mechanotransduction complex in zebrafish hair cells is regulated by Transmembrane O-methyltransferase (Tomt). Erickson T, et al. Elife, 2017 May 23. PMID 28534737, Free PMC Article
  2. Discovery and characterization of novel vascular and hematopoietic genes downstream of etsrp in zebrafish. Gomez GA, et al. PLoS One, 2009. PMID 19308258, Free PMC Article
  3. Systematic discovery of novel ciliary genes through functional genomics in the zebrafish. Choksi SP, et al. Development, 2014 Sep. PMID 25139857, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC153736

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat-containing protein 51
Names
leucine rich transmembrane and 0-methyltransferase domain containing
leucine rich transmembrane and O-methyltransferase domain containing
NP_001070236.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001076768.1 → NP_001070236.1  leucine-rich repeat-containing protein 51

    Status: PROVISIONAL

    Source sequence(s)
    BC124442
    UniProtKB/TrEMBL
    A0A8M3AIT5, Q08C25
    Related
    ENSDARP00000059549.3, ENSDART00000059550.5
    Conserved Domains (3) summary
    sd00031
    Location:71 → 93
    LRR_1; leucine-rich repeat [structural motif]
    pfam12799
    Location:69 → 112
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:69 → 129
    LRR_8; Leucine rich repeat

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    44053244..44062826
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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