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SCG5 secretogranin V [ Gallus gallus (chicken) ]

Gene ID: 769742, updated on 3-Dec-2024

Summary

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Symbol
SCG5provided by CGNC
Full Name
secretogranin Vprovided by CGNC
Primary source
CGNC:7394
See related
Ensembl:ENSGALG00010021639
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See SCG5 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (30081676..30109634, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (30063332..30091257, complement)

Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene formin 1 Neighboring gene gremlin 1, DAN family BMP antagonist Neighboring gene Rho GTPase activating protein 11B Neighboring gene RAS guanyl releasing protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables enzyme regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuropeptide signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of hormone secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in secretory granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neuroendocrine protein 7B2
Names
secretogranin V (7B2 protein)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001291758.3 → NP_001278687.3  neuroendocrine protein 7B2 precursor

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000215
    UniProtKB/TrEMBL
    A0A8V0ZDV1
    Related
    ENSGALP00010031469.1, ENSGALT00010052563.1
    Conserved Domains (1) summary
    pfam05281
    Location:17 → 195
    Secretogranin_V; Neuroendocrine protein 7B2 precursor (Secretogranin V)

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    30081676..30109634 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040701133.2 → XP_040557067.1  neuroendocrine protein 7B2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZRR9
    Related
    ENSGALP00010031470.1, ENSGALT00010052565.1
    Conserved Domains (1) summary
    pfam05281
    Location:77 → 255
    Secretogranin_V; Neuroendocrine protein 7B2 precursor (Secretogranin V)

  2. XM_040701135.2 → XP_040557069.1  neuroendocrine protein 7B2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZDV1
    Conserved Domains (1) summary
    pfam05281
    Location:17 → 195
    Secretogranin_V; Neuroendocrine protein 7B2 precursor (Secretogranin V)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    30063332..30091257 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046918901.1 → XP_046774857.1  neuroendocrine protein 7B2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZRR9

  2. XM_046918902.1 → XP_046774858.1  neuroendocrine protein 7B2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZDV1
Nucleotide Protein Strain
Heading Accession and Version

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