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SCFD2 sec1 family domain containing 2 [ Gallus gallus (chicken) ]

Gene ID: 770088, updated on 17-Aug-2024

Summary

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Symbol
SCFD2provided by CGNC
Full Name
sec1 family domain containing 2provided by CGNC
Primary source
CGNC:55764
See related
Ensembl:ENSGALG00010014267
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See SCFD2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (65279741..65461144)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (65263639..65445302)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene ligand of numb-protein X 1 Neighboring gene factor interacting with PAPOLA and CPSF1 Neighboring gene RAS like family 11 member B Neighboring gene small nucleolar RNA SNORA26 Neighboring gene uncharacterized LOC422757

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sec1 family domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    65279741..65461144
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001233405.7 → XP_001233406.4  sec1 family domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A1D5NZ00
    Related
    ENSGALP00010020176.1, ENSGALT00010034350.1
    Conserved Domains (1) summary
    cl15415
    Location:593 → 633
    Sec1; Sec1 family

  2. XM_015285524.4 → XP_015141010.1  sec1 family domain-containing protein 2 isoform X2

    Conserved Domains (1) summary
    cl15415
    Location:592 → 632
    Sec1; Sec1 family

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    65263639..65445302
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040671554.2 → XP_040527488.1  sec1 family domain-containing protein 2 isoform X1

  2. XM_040671555.2 → XP_040527489.1  sec1 family domain-containing protein 2 isoform X2

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials