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TRIM47 tripartite motif containing 47 [ Gallus gallus (chicken) ]

Gene ID: 770100, updated on 17-Aug-2024

Summary

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Official Symbol
TRIM47provided by CGNC
Official Full Name
tripartite motif containing 47provided by CGNC
Primary source
CGNC:55772
See related
Ensembl:ENSGALG00010029775
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See TRIM47 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
6
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 18 NC_052549.1 (5255687..5264032)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 18 NC_052590.1 (4859223..4867576)

Chromosome 18 - NC_052549.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L38 Neighboring gene tripartite motif containing 65 Neighboring gene WW domain binding protein 2 Neighboring gene unc-13 homolog D Neighboring gene unk zinc finger

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIM47

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052549.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    5255687..5264032
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003642325.6 → XP_003642373.3  E3 ubiquitin-protein ligase TRIM47

    UniProtKB/TrEMBL
    A0A8V1ANT4
    Related
    ENSGALP00010044723.1, ENSGALT00010072033.1
    Conserved Domains (6) summary
    COG4487
    Location:254 → 393
    COG4487; Uncharacterized protein, contains DUF2130 domain [Function unknown]
    TIGR00599
    Location:31 → 154
    rad18; DNA repair protein rad18
    cd16604
    Location:34 → 84
    RING-HC_TRIM47_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 47 (TRIM47) and similar proteins
    cd19769
    Location:229 → 274
    Bbox2_TRIM16-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM16, TRIM29, TRIM47 and similar proteins
    cd19842
    Location:177 → 226
    Bbox1_TRIM25-like_C-IV; B-box-type 1 zinc finger found in tripartite motif-containing proteins, TRIM25, TRIM47 and similar proteins
    cl02614
    Location:469 → 669
    SPRY; SPRY domain

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052590.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    4859223..4867576
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040686270.2 → XP_040542204.1  E3 ubiquitin-protein ligase TRIM47

    Conserved Domains (6) summary
    COG4487
    Location:254 → 393
    COG4487; Uncharacterized protein, contains DUF2130 domain [Function unknown]
    TIGR00599
    Location:31 → 154
    rad18; DNA repair protein rad18
    cd16604
    Location:34 → 84
    RING-HC_TRIM47_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 47 (TRIM47) and similar proteins
    cd19769
    Location:229 → 274
    Bbox2_TRIM16-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM16, TRIM29, TRIM47 and similar proteins
    cd19842
    Location:177 → 226
    Bbox1_TRIM25-like_C-IV; B-box-type 1 zinc finger found in tripartite motif-containing proteins, TRIM25, TRIM47 and similar proteins
    cl02614
    Location:469 → 669
    SPRY; SPRY domain
Nucleotide Protein Strain
Heading Accession and Version

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