BSG basigin [Gallus gallus (chicken)] - Gene

Summary

Official Symbol: BSGprovided by CGNC
Official Full Name: basiginprovided by CGNC
Primary source: CGNC:909
See related: Ensembl:ENSGALG00010027468
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as: Bsg1
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 28

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	28	NC_052559.1 (3108186..3119193)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	28	NC_052600.1 (2674274..2685262)

Chromosome 28 - NC_052559.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables cell-cell adhesion mediator activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in axon guidance	IEA Inferred from Electronic Annotation more info	PubMed
involved_in dendrite self-avoidance	IEA Inferred from Electronic Annotation more info	PubMed
involved_in homophilic cell adhesion via plasma membrane adhesion molecules	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in axon	IEA Inferred from Electronic Annotation more info	PubMed
located_in plasma membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: basigin

Names: 5A11 antigen; basigin (Ok blood group); blood-brain barrier HT7 antigen; neurothelin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001198990.3 → NP_001185919.1 basigin isoform 1 precursor

See identical proteins and their annotated locations for NP_001185919.1

Status: VALIDATED

Description

Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform 1).

Source sequence(s)

JAENSK010000375

UniProtKB/Swiss-Prot

P17790, Q6X975

Related

ENSGALP00010040770.1, ENSGALT00010066568.1

Conserved Domains (3) summary

smart00409
Location:236 → 323

IG; Immunoglobulin

pfam13927
Location:144 → 212

Ig_3; Immunoglobulin domain

cd20940
Location:28 → 143

Ig0_BSG1; Immunoglobulin-like Ig0 domain of basigin-1 (BSG1) and similar proteins
NM_001198992.2 → NP_001185921.1 basigin isoform 2 precursor

See identical proteins and their annotated locations for NP_001185921.1

Status: VALIDATED

Description

Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting protein (isoform 2) is shorter compared to isoform 1.

Source sequence(s)

JAENSK010000375

UniProtKB/Swiss-Prot

P17790

Conserved Domains (3) summary

cd00096
Location:131 → 204

Ig; Immunoglobulin domain

smart00410
Location:120 → 207

IG_like; Immunoglobulin like

pfam13927
Location:29 → 96

Ig_3; Immunoglobulin domain