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GOPC golgi associated PDZ and coiled-coil motif containing [ Gallus gallus (chicken) ]

Gene ID: 770364, updated on 17-Aug-2024

Summary

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Symbol
GOPCprovided by CGNC
Full Name
golgi associated PDZ and coiled-coil motif containingprovided by CGNC
Primary source
CGNC:11060
See related
Ensembl:ENSGALG00010012341
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See GOPC in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (63072985..63101180)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (62932054..62960247)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112532210 Neighboring gene NUS1 dehydrodolichyl diphosphate synthase subunit Neighboring gene uncharacterized LOC124417811 Neighboring gene discoidin, CUB and LCCL domain containing 1 Neighboring gene ROS proto-oncogene 1, receptor tyrosine kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane transporter binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of protein localization to cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Golgi-associated PDZ and coiled-coil motif-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    63072985..63101180
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015284489.3 → XP_015139975.2  Golgi-associated PDZ and coiled-coil motif-containing protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0YF77
    Related
    ENSGALP00010017169.1, ENSGALT00010029537.1
    Conserved Domains (2) summary
    cd00992
    Location:340 → 422
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    TIGR02169
    Location:88 → 330
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  2. XM_015284490.3 → XP_015139976.2  Golgi-associated PDZ and coiled-coil motif-containing protein isoform X2

    UniProtKB/TrEMBL
    A0A8V0YM48
    Related
    ENSGALP00010017173.1, ENSGALT00010029542.1
    Conserved Domains (2) summary
    cd00992
    Location:332 → 414
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam10186
    Location:133 → 290
    Atg14; Vacuolar sorting 38 and autophagy-related subunit 14

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    62932054..62960247
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040666649.2 → XP_040522583.1  Golgi-associated PDZ and coiled-coil motif-containing protein isoform X1

    Conserved Domains (2) summary
    cd00992
    Location:340 → 422
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    TIGR02168
    Location:88 → 277
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. XM_040666650.2 → XP_040522584.1  Golgi-associated PDZ and coiled-coil motif-containing protein isoform X2

    Conserved Domains (2) summary
    PRK09039
    Location:99 → 268
    PRK09039; peptidoglycan -binding protein
    cd00992
    Location:332 → 414
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
Nucleotide Protein
Heading Accession and Version

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